runsolver Copyright (C) 2010-2011 Olivier ROUSSEL
This is runsolver version 3.3.1 (svn: 989)
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-3752079-1339130194/watcher-3752079-1339130194 -o /tmp/evaluation-result-3752079-1339130194/solver-3752079-1339130194 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itdqb.sh HOME/instance-3752079-1339130194.opb 1455759299 HOME HOME
running on 4 cores: 1,3,5,7
Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 1900 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 15872000 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 15923200 KiB
Current StackSize limit: 10240 KiB
[startup+0 s]
/proc/loadavg: 2.00 2.01 2.00 3/179 3111
/proc/meminfo: memFree=18998768/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
[startup+0.061061 s]
/proc/loadavg: 2.00 2.01 2.00 3/179 3111
/proc/meminfo: memFree=18998768/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.10034 s]
/proc/loadavg: 2.00 2.01 2.00 3/179 3111
/proc/meminfo: memFree=18998768/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.300301 s]
/proc/loadavg: 2.00 2.01 2.00 3/179 3111
/proc/meminfo: memFree=18998768/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.700309 s]
/proc/loadavg: 2.00 2.01 2.00 3/179 3111
/proc/meminfo: memFree=18998768/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+1.50036 s]
/proc/loadavg: 2.00 2.01 2.00 3/181 3113
/proc/meminfo: memFree=18892560/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
[pid=3112] ppid=3111 vsize=177712 CPUtime=1.49 cores=1,3,5,7
/proc/3112/stat : 3112 (npSolver-pbo) R 3111 3111 30107 0 -1 4202496 33809 0 0 0 141 8 0 0 20 0 1 0 379143820 181977088 44069 33554432000 4194304 6004724 140733229232800 140733229229608 4224848 0 0 4096 0 0 0 0 17 3 0 0 0 0 0
/proc/3112/statm: 44428 44069 139 442 0 43982 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 186860
[startup+3.1004 s]
/proc/loadavg: 2.00 2.01 2.00 3/182 3117
/proc/meminfo: memFree=18816836/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
[pid=3112] ppid=3111 vsize=177716 CPUtime=2.52 cores=1,3,5,7
/proc/3112/stat : 3112 (npSolver-pbo) S 3111 3111 30107 0 -1 4204032 33947 3150 0 0 207 23 21 1 20 0 1 0 379143820 181981184 44108 33554432000 4194304 6004724 140733229232800 140733229227352 5251733 0 0 4096 0 18446744071580380219 0 0 17 5 0 0 0 0 0
/proc/3112/statm: 44429 44108 174 442 0 43983 0
[pid=3117] ppid=3112 vsize=9632 CPUtime=0.01 cores=1,3,5,7
/proc/3117/stat : 3117 (glucosInc) S 3112 3111 30107 0 -1 4202496 1266 0 0 0 1 0 0 0 20 0 1 0 379144002 9863168 1144 33554432000 4194304 5654031 140735609432032 140735609430344 4976656 0 0 4096 0 18446744071580380219 0 0 17 1 0 0 0 0 0
/proc/3117/statm: 2408 1144 147 357 0 2048 0
Current children cumulated CPU time (s) 2.53
Current children cumulated vsize (KiB) 196496
[startup+6.30034 s]
/proc/loadavg: 2.08 2.02 2.01 2/183 3118
/proc/meminfo: memFree=18508200/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
[pid=3112] ppid=3111 vsize=177716 CPUtime=2.52 cores=1,3,5,7
/proc/3112/stat : 3112 (npSolver-pbo) S 3111 3111 30107 0 -1 4204032 33947 3150 0 0 207 23 21 1 20 0 1 0 379143820 181981184 44108 33554432000 4194304 6004724 140733229232800 140733229227352 5251733 0 0 4096 0 18446744071580380219 0 0 17 5 0 0 0 0 0
/proc/3112/statm: 44429 44108 174 442 0 43983 0
[pid=3117] ppid=3112 vsize=9632 CPUtime=0.01 cores=1,3,5,7
/proc/3117/stat : 3117 (glucosInc) S 3112 3111 30107 0 -1 4202496 1266 0 0 0 1 0 0 0 20 0 1 0 379144002 9863168 1144 33554432000 4194304 5654031 140735609432032 140735609430344 4976656 0 0 4096 0 18446744071580380219 0 0 17 1 0 0 0 0 0
/proc/3117/statm: 2408 1144 147 357 0 2048 0
Current children cumulated CPU time (s) 2.53
Current children cumulated vsize (KiB) 196496
heavy processes:
%CPU=12 pid=3118 uid=0 cmd=
Solver just ended. Dumping a history of the last processes samples
[startup+7.40041 s]
/proc/loadavg: 2.08 2.02 2.01 2/183 3118
/proc/meminfo: memFree=18519732/32873844 swapFree=7628/7628
[pid=3111] ppid=3109 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/3111/stat : 3111 (npSolver-pbo-It) S 3109 3111 30107 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 379143819 9367552 275 33554432000 4194304 5064252 140735236138864 140735236137776 254750123598 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/3111/statm: 2287 275 233 213 0 72 0
[pid=3112] ppid=3111 vsize=177716 CPUtime=2.52 cores=1,3,5,7
/proc/3112/stat : 3112 (npSolver-pbo) S 3111 3111 30107 0 -1 4204032 33947 3150 0 0 207 23 21 1 20 0 1 0 379143820 181981184 44108 33554432000 4194304 6004724 140733229232800 140733229227352 5251733 0 0 4096 0 18446744071580380219 0 0 17 5 0 0 0 0 0
/proc/3112/statm: 44429 44108 174 442 0 43983 0
[pid=3117] ppid=3112 vsize=9632 CPUtime=0.01 cores=1,3,5,7
/proc/3117/stat : 3117 (glucosInc) S 3112 3111 30107 0 -1 4202496 1266 0 0 0 1 0 0 0 20 0 1 0 379144002 9863168 1144 33554432000 4194304 5654031 140735609432032 140735609430344 4976656 0 0 4096 0 18446744071580380219 0 0 17 1 0 0 0 0 0
/proc/3117/statm: 2408 1144 147 357 0 2048 0
Current children cumulated CPU time (s) 2.53
Current children cumulated vsize (KiB) 196496
Child status: 0
Real time (s): 7.42365
CPU time (s): 2.55561
CPU user time (s): 2.29465
CPU system time (s): 0.26096
CPU usage (%): 34.4253
Max. virtual memory (cumulated for all children) (KiB): 235768
getrusage(RUSAGE_CHILDREN,...) data:
user time used= 2.29465
system time used= 0.26096
maximum resident set size= 233208
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 37472
page faults= 0
swaps= 0
block input operations= 0
block output operations= 17096
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 39320
involuntary context switches= 11
runsolver used 0.010998 second user time and 0.055991 second system time
The end
Begin job on node145 at 2012-06-08 06:36:34
IDJOB=3752079
IDBENCH=2951
IDSOLVER=2335
FILE ID=node145/3752079-1339130194
RUNJOBID= node145-1339110947-31549
PBS_JOBID= 14643708
Free space on /tmp= 69340 MiB
SOLVER NAME= npSolver inc-topdown-quickBound
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.08.opb
COMMAND LINE= DIR/npSolver-pbo-Itdqb.sh BENCHNAME RANDOMSEED TMPDIR DIR
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-3752079-1339130194/watcher-3752079-1339130194 -o /tmp/evaluation-result-3752079-1339130194/solver-3752079-1339130194 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itdqb.sh HOME/instance-3752079-1339130194.opb 1455759299 HOME HOME
TIME LIMIT= 1800 seconds
MEMORY LIMIT= 15500 MiB
NBCORE= 4
MD5SUM BENCH= 7e2e59a69914c0aa8f6d18f073e252a7
RANDOM SEED=1455759299
node145.alineos.net Linux 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.149
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5334.29
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.149
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 0
cpu cores : 4
apicid : 16
initial apicid : 16
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.149
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5313.38
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.149
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 1
cpu cores : 4
apicid : 18
initial apicid : 18
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.149
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.149
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 2
cpu cores : 4
apicid : 20
initial apicid : 20
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.149
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.149
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 3
cpu cores : 4
apicid : 22
initial apicid : 22
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.89
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
/proc/meminfo:
MemTotal: 32873844 kB
MemFree: 18999668 kB
Buffers: 490260 kB
Cached: 6657040 kB
SwapCached: 4 kB
Active: 9535036 kB
Inactive: 3398788 kB
Active(anon): 5777944 kB
Inactive(anon): 10864 kB
Active(file): 3757092 kB
Inactive(file): 3387924 kB
Unevictable: 7628 kB
Mlocked: 7628 kB
SwapTotal: 67108856 kB
SwapFree: 67108852 kB
Dirty: 23308 kB
Writeback: 0 kB
AnonPages: 5793500 kB
Mapped: 15340 kB
Shmem: 200 kB
Slab: 787960 kB
SReclaimable: 229332 kB
SUnreclaim: 558628 kB
KernelStack: 1480 kB
PageTables: 15376 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 83545776 kB
Committed_AS: 6798172 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 346368 kB
VmallocChunk: 34341987984 kB
HardwareCorrupted: 0 kB
AnonHugePages: 3215360 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 7872 kB
DirectMap2M: 33538048 kB
Free space on /tmp at the end= 69188 MiB
End job on node145 at 2012-06-08 06:36:42