1.49/1.56 c run inc solver
1.49/1.56 c [INC SYSTEM] run initial solver
1.49/1.56 c [INC SYSTEM] preprocess with white file
2.27/2.30 c [INC SYSTEM] finished preprocessing in 0 s
2.27/2.30 c [INC SYSTEM] execute solver
2.27/2.32 c [INC SEARCH] formula is SAT
2.27/2.32 c [INC SYSTEM] solved the initial formula
2.86/2.91 npSolver-pbo: IterativeSolver.cc:102: void IterativeSolver::checkSolution(): Assertion `parser.cb.ok' failed.
2.89/3.14 HOME/npSolver-pbo-Itdqb.sh: line 18: 22925 Aborted (core dumped) ./npSolver-pbo $file $tmp -rnd_seed=$seed -useQuickBound=1 -useBinSearch=0 -useCP2=1 -useInc=1
runsolver Copyright (C) 2010-2011 Olivier ROUSSEL
This is runsolver version 3.3.1 (svn: 989)
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-3702922-1338073287/watcher-3702922-1338073287 -o /tmp/evaluation-result-3702922-1338073287/solver-3702922-1338073287 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itdqb.sh HOME/instance-3702922-1338073287.opb 1727098301 HOME HOME
running on 4 cores: 1,3,5,7
Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 1900 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 15872000 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 15923200 KiB
Current StackSize limit: 10240 KiB
[startup+0 s]
/proc/loadavg: 4.89 3.76 2.73 3/178 22924
/proc/meminfo: memFree=29669032/32873648 swapFree=6860/6860
[pid=22924] ppid=22922 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/22924/stat : 22924 (npSolver-pbo-It) S 22922 22924 4103 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273454814 9367552 275 33554432000 4194304 5064252 140734550956000 140734550954912 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/22924/statm: 2287 275 233 213 0 72 0
[startup+0.0528121 s]
/proc/loadavg: 4.89 3.76 2.73 3/178 22924
/proc/meminfo: memFree=29669032/32873648 swapFree=6860/6860
[pid=22924] ppid=22922 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/22924/stat : 22924 (npSolver-pbo-It) S 22922 22924 4103 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273454814 9367552 275 33554432000 4194304 5064252 140734550956000 140734550954912 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/22924/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.100261 s]
/proc/loadavg: 4.89 3.76 2.73 3/178 22924
/proc/meminfo: memFree=29669032/32873648 swapFree=6860/6860
[pid=22924] ppid=22922 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/22924/stat : 22924 (npSolver-pbo-It) S 22922 22924 4103 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273454814 9367552 275 33554432000 4194304 5064252 140734550956000 140734550954912 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/22924/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.300229 s]
/proc/loadavg: 4.89 3.76 2.73 3/178 22924
/proc/meminfo: memFree=29669032/32873648 swapFree=6860/6860
[pid=22924] ppid=22922 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/22924/stat : 22924 (npSolver-pbo-It) S 22922 22924 4103 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273454814 9367552 275 33554432000 4194304 5064252 140734550956000 140734550954912 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/22924/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.700129 s]
/proc/loadavg: 4.89 3.76 2.73 3/178 22924
/proc/meminfo: memFree=29669032/32873648 swapFree=6860/6860
[pid=22924] ppid=22922 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/22924/stat : 22924 (npSolver-pbo-It) S 22922 22924 4103 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273454814 9367552 275 33554432000 4194304 5064252 140734550956000 140734550954912 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/22924/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+1.50027 s]
/proc/loadavg: 4.89 3.76 2.73 3/180 22926
/proc/meminfo: memFree=29567096/32873648 swapFree=6860/6860
[pid=22924] ppid=22922 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/22924/stat : 22924 (npSolver-pbo-It) S 22922 22924 4103 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273454814 9367552 275 33554432000 4194304 5064252 140734550956000 140734550954912 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/22924/statm: 2287 275 233 213 0 72 0
[pid=22925] ppid=22924 vsize=10304 CPUtime=1.49 cores=1,3,5,7
/proc/22925/stat : 22925 (npSolver-pbo) R 22924 22924 4103 0 -1 4202496 2150 0 0 0 148 1 0 0 20 0 1 0 273454814 10551296 2133 33554432000 4194304 5992684 140733628672064 140733628668568 5179600 0 0 4096 0 0 0 0 17 3 0 0 0 0 0
/proc/22925/statm: 2576 2133 145 440 0 2132 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 19452
[startup+3.10022 s]
/proc/loadavg: 4.89 3.76 2.73 3/182 22928
/proc/meminfo: memFree=29418104/32873648 swapFree=6860/6860
[pid=22924] ppid=22922 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/22924/stat : 22924 (npSolver-pbo-It) S 22922 22924 4103 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273454814 9367552 275 33554432000 4194304 5064252 140734550956000 140734550954912 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/22924/statm: 2287 275 233 213 0 72 0
[pid=22925] ppid=22924 vsize=11304 CPUtime=2.89 cores=1,3,5,7
/proc/22925/stat : 22925 (npSolver-pbo) S 22924 22924 4103 0 -1 4204032 3067 9257 0 0 211 5 70 3 20 0 1 0 273454814 11575296 2503 33554432000 4194304 5992684 140733628672064 140733628666600 5240597 0 0 4096 0 18446744071580380219 0 0 17 3 0 0 0 0 0
/proc/22925/statm: 2826 2503 184 440 0 2382 0
Current children cumulated CPU time (s) 2.89
Current children cumulated vsize (KiB) 20452
Solver just ended. Dumping a history of the last processes samples
Child status: 0
Real time (s): 3.14392
CPU time (s): 2.90756
CPU user time (s): 2.81957
CPU system time (s): 0.087986
CPU usage (%): 92.4819
Max. virtual memory (cumulated for all children) (KiB): 66832
getrusage(RUSAGE_CHILDREN,...) data:
user time used= 2.81957
system time used= 0.087986
maximum resident set size= 35416
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 12699
page faults= 0
swaps= 0
block input operations= 0
block output operations= 17840
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2249
involuntary context switches= 10
runsolver used 0.006998 second user time and 0.023996 second system time
The end
Begin job on node116 at 2012-05-27 01:01:28
IDJOB=3702922
IDBENCH=2951
IDSOLVER=2278
FILE ID=node116/3702922-1338073287
RUNJOBID= node116-1338052956-4120
PBS_JOBID= 14624409
Free space on /tmp= 71440 MiB
SOLVER NAME= npSolver inc-topdown-quickBound
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.08.opb
COMMAND LINE= DIR/npSolver-pbo-Itdqb.sh BENCHNAME RANDOMSEED TMPDIR DIR
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-3702922-1338073287/watcher-3702922-1338073287 -o /tmp/evaluation-result-3702922-1338073287/solver-3702922-1338073287 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itdqb.sh HOME/instance-3702922-1338073287.opb 1727098301 HOME HOME
TIME LIMIT= 1800 seconds
MEMORY LIMIT= 15500 MiB
NBCORE= 4
MD5SUM BENCH= 7e2e59a69914c0aa8f6d18f073e252a7
RANDOM SEED=1727098301
node116.alineos.net Linux 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5333.11
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 0
cpu cores : 4
apicid : 16
initial apicid : 16
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5438.54
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 1
cpu cores : 4
apicid : 18
initial apicid : 18
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.92
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 2
cpu cores : 4
apicid : 20
initial apicid : 20
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.92
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.90
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 3
cpu cores : 4
apicid : 22
initial apicid : 22
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
/proc/meminfo:
MemTotal: 32873648 kB
MemFree: 29670156 kB
Buffers: 251156 kB
Cached: 668824 kB
SwapCached: 3344 kB
Active: 2200200 kB
Inactive: 193520 kB
Active(anon): 1465420 kB
Inactive(anon): 10844 kB
Active(file): 734780 kB
Inactive(file): 182676 kB
Unevictable: 6860 kB
Mlocked: 6860 kB
SwapTotal: 67108856 kB
SwapFree: 67103496 kB
Dirty: 38520 kB
Writeback: 0 kB
AnonPages: 1457780 kB
Mapped: 13200 kB
Shmem: 96 kB
Slab: 665984 kB
SReclaimable: 108808 kB
SUnreclaim: 557176 kB
KernelStack: 1480 kB
PageTables: 6884 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 83545680 kB
Committed_AS: 1905236 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 346400 kB
VmallocChunk: 34341988052 kB
HardwareCorrupted: 0 kB
AnonHugePages: 743424 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 7680 kB
DirectMap2M: 33538048 kB
Free space on /tmp at the end= 71420 MiB
End job on node116 at 2012-05-27 01:01:31