runsolver Copyright (C) 2010-2011 Olivier ROUSSEL
This is runsolver version 3.3.1 (svn: 989)
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-3702921-1338073349/watcher-3702921-1338073349 -o /tmp/evaluation-result-3702921-1338073349/solver-3702921-1338073349 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itdqb.sh HOME/instance-3702921-1338073349.opb 1285520036 HOME HOME
running on 4 cores: 1,3,5,7
Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 1900 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 15872000 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 15923200 KiB
Current StackSize limit: 10240 KiB
[startup+0 s]
/proc/loadavg: 3.11 3.45 2.69 3/178 23188
/proc/meminfo: memFree=23916424/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
[startup+0.00825112 s]
/proc/loadavg: 3.11 3.45 2.69 3/178 23188
/proc/meminfo: memFree=23916424/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.100132 s]
/proc/loadavg: 3.11 3.45 2.69 3/178 23188
/proc/meminfo: memFree=23916424/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.300104 s]
/proc/loadavg: 3.11 3.45 2.69 3/178 23188
/proc/meminfo: memFree=23916424/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.700101 s]
/proc/loadavg: 3.11 3.45 2.69 3/178 23188
/proc/meminfo: memFree=23916424/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+1.5002 s]
/proc/loadavg: 3.11 3.45 2.69 3/180 23190
/proc/meminfo: memFree=23816420/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
[pid=23189] ppid=23188 vsize=10840 CPUtime=1.33 cores=1,3,5,7
/proc/23189/stat : 23189 (npSolver-pbo) S 23188 23188 4103 0 -1 4202496 2480 0 0 0 132 1 0 0 20 0 1 0 273461010 11100160 2244 33554432000 4194304 5992684 140735210589312 140735210583760 5175646 0 65536 4102 0 18446744071579302229 0 0 17 1 0 0 0 0 0
/proc/23189/statm: 2710 2244 164 440 0 2266 0
Current children cumulated CPU time (s) 1.33
Current children cumulated vsize (KiB) 19988
Solver just ended. Dumping a history of the last processes samples
[startup+2.30018 s]
/proc/loadavg: 3.02 3.43 2.69 3/181 23194
/proc/meminfo: memFree=23703996/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
[pid=23189] ppid=23188 vsize=11188 CPUtime=2.25 cores=1,3,5,7
/proc/23189/stat : 23189 (npSolver-pbo) R 23188 23188 4103 0 -1 4202496 2608 9255 0 0 161 1 61 2 20 0 1 0 273461010 11456512 2338 33554432000 4194304 5992684 140735210589312 140735210584088 5179600 0 0 4096 0 0 0 0 17 1 0 0 0 0 0
/proc/23189/statm: 2797 2338 172 440 0 2353 0
[pid=23194] ppid=23189 vsize=10216 CPUtime=0.01 cores=1,3,5,7
/proc/23194/stat : 23194 (glucosInc) S 23189 23188 4103 0 -1 4202496 1298 0 0 0 1 0 0 0 20 0 1 0 273461208 10461184 1195 33554432000 4194304 5654031 140737075461488 140737075459800 4976656 0 0 4096 0 18446744071580380219 0 0 17 5 0 0 0 0 0
/proc/23194/statm: 2554 1195 147 357 0 2194 0
Current children cumulated CPU time (s) 2.26
Current children cumulated vsize (KiB) 30552
[startup+2.70026 s]
/proc/loadavg: 3.02 3.43 2.69 3/181 23194
/proc/meminfo: memFree=23703996/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
[pid=23189] ppid=23188 vsize=11192 CPUtime=2.48 cores=1,3,5,7
/proc/23189/stat : 23189 (npSolver-pbo) S 23188 23188 4103 0 -1 4204032 2623 9255 0 0 182 3 61 2 20 0 1 0 273461010 11460608 2351 33554432000 4194304 5992684 140735210589312 140735210583848 5240597 0 0 4096 0 18446744071580380219 0 0 17 1 0 0 0 0 0
/proc/23189/statm: 2798 2351 184 440 0 2354 0
[pid=23194] ppid=23189 vsize=10216 CPUtime=0.01 cores=1,3,5,7
/proc/23194/stat : 23194 (glucosInc) S 23189 23188 4103 0 -1 4202496 1298 0 0 0 1 0 0 0 20 0 1 0 273461208 10461184 1195 33554432000 4194304 5654031 140737075461488 140737075459800 4976656 0 0 4096 0 18446744071580380219 0 0 17 5 0 0 0 0 0
/proc/23194/statm: 2554 1195 147 357 0 2194 0
Current children cumulated CPU time (s) 2.49
Current children cumulated vsize (KiB) 30556
[startup+2.9002 s]
/proc/loadavg: 3.02 3.43 2.69 3/181 23194
/proc/meminfo: memFree=23703996/32873648 swapFree=6860/6860
[pid=23188] ppid=23186 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/23188/stat : 23188 (npSolver-pbo-It) S 23186 23188 4103 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273461009 9367552 274 33554432000 4194304 5064252 140734717611792 140734717610704 266435454542 0 65536 4100 65538 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/23188/statm: 2287 274 233 213 0 72 0
[pid=23189] ppid=23188 vsize=11192 CPUtime=2.48 cores=1,3,5,7
/proc/23189/stat : 23189 (npSolver-pbo) S 23188 23188 4103 0 -1 4204032 2623 9255 0 0 182 3 61 2 20 0 1 0 273461010 11460608 2351 33554432000 4194304 5992684 140735210589312 140735210583848 5240597 0 0 4096 0 18446744071580380219 0 0 17 1 0 0 0 0 0
/proc/23189/statm: 2798 2351 184 440 0 2354 0
[pid=23194] ppid=23189 vsize=10216 CPUtime=0.01 cores=1,3,5,7
/proc/23194/stat : 23194 (glucosInc) S 23189 23188 4103 0 -1 4202496 1298 0 0 0 1 0 0 0 20 0 1 0 273461208 10461184 1195 33554432000 4194304 5654031 140737075461488 140737075459800 4976656 0 0 4096 0 18446744071580380219 0 0 17 5 0 0 0 0 0
/proc/23194/statm: 2554 1195 147 357 0 2194 0
Current children cumulated CPU time (s) 2.49
Current children cumulated vsize (KiB) 30556
Child status: 0
Real time (s): 2.98289
CPU time (s): 2.50562
CPU user time (s): 2.44263
CPU system time (s): 0.06299
CPU usage (%): 83.9996
Max. virtual memory (cumulated for all children) (KiB): 30556
getrusage(RUSAGE_CHILDREN,...) data:
user time used= 2.44263
system time used= 0.06299
maximum resident set size= 33368
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 12252
page faults= 0
swaps= 0
block input operations= 0
block output operations= 15264
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2212
involuntary context switches= 13
runsolver used 0.006998 second user time and 0.011998 second system time
The end
Begin job on node116 at 2012-05-27 01:02:30
IDJOB=3702921
IDBENCH=2957
IDSOLVER=2278
FILE ID=node116/3702921-1338073349
RUNJOBID= node116-1338052956-4120
PBS_JOBID= 14624409
Free space on /tmp= 71440 MiB
SOLVER NAME= npSolver inc-topdown-quickBound
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.00.opb
COMMAND LINE= DIR/npSolver-pbo-Itdqb.sh BENCHNAME RANDOMSEED TMPDIR DIR
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-3702921-1338073349/watcher-3702921-1338073349 -o /tmp/evaluation-result-3702921-1338073349/solver-3702921-1338073349 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itdqb.sh HOME/instance-3702921-1338073349.opb 1285520036 HOME HOME
TIME LIMIT= 1800 seconds
MEMORY LIMIT= 15500 MiB
NBCORE= 4
MD5SUM BENCH= 9e8d546df5cfe52cfb5a29d8ae802e41
RANDOM SEED=1285520036
node116.alineos.net Linux 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5333.11
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 0
cpu cores : 4
apicid : 16
initial apicid : 16
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5438.54
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 1
cpu cores : 4
apicid : 18
initial apicid : 18
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.92
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 2
cpu cores : 4
apicid : 20
initial apicid : 20
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.92
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.90
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.556
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 3
cpu cores : 4
apicid : 22
initial apicid : 22
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
/proc/meminfo:
MemTotal: 32873648 kB
MemFree: 23917440 kB
Buffers: 252424 kB
Cached: 689176 kB
SwapCached: 3344 kB
Active: 7918584 kB
Inactive: 216204 kB
Active(anon): 7184620 kB
Inactive(anon): 10844 kB
Active(file): 733964 kB
Inactive(file): 205360 kB
Unevictable: 6860 kB
Mlocked: 6860 kB
SwapTotal: 67108856 kB
SwapFree: 67103496 kB
Dirty: 21608 kB
Writeback: 0 kB
AnonPages: 7179352 kB
Mapped: 13200 kB
Shmem: 96 kB
Slab: 665540 kB
SReclaimable: 108376 kB
SUnreclaim: 557164 kB
KernelStack: 1448 kB
PageTables: 17868 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 83545680 kB
Committed_AS: 7743272 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 346400 kB
VmallocChunk: 34341988052 kB
HardwareCorrupted: 0 kB
AnonHugePages: 3870720 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 7680 kB
DirectMap2M: 33538048 kB
Free space on /tmp at the end= 71424 MiB
End job on node116 at 2012-05-27 01:02:33