1.49/1.58 c run inc solver
1.49/1.58 c [INC SYSTEM] run initial solver
1.49/1.58 c [INC SYSTEM] preprocess with white file
2.26/2.33 c [INC SYSTEM] finished preprocessing in 0 s
2.26/2.33 c [INC SYSTEM] execute solver
2.26/2.35 c [INC SEARCH] formula is SAT
2.26/2.35 c [INC SYSTEM] solved the initial formula
2.86/2.94 npSolver-pbo: IterativeSolver.cc:102: void IterativeSolver::checkSolution(): Assertion `parser.cb.ok' failed.
2.91/3.18 HOME/npSolver-pbo-I.sh: line 18: 2352 Aborted (core dumped) ./npSolver-pbo $file $tmp -rnd_seed=$seed -useQuickBound=0 -useBinSearch=1 -useCP2=1 -useInc=1
runsolver Copyright (C) 2010-2011 Olivier ROUSSEL
This is runsolver version 3.3.1 (svn: 989)
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-3699730-1338072837/watcher-3699730-1338072837 -o /tmp/evaluation-result-3699730-1338072837/solver-3699730-1338072837 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-I.sh HOME/instance-3699730-1338072837.opb 1340502706 HOME HOME
running on 4 cores: 0,2,4,6
Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 1900 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 15872000 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 15923200 KiB
Current StackSize limit: 10240 KiB
[startup+0 s]
/proc/loadavg: 4.18 3.48 2.71 3/179 2351
/proc/meminfo: memFree=28444744/32873648 swapFree=6844/6844
[pid=2351] ppid=2349 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/2351/stat : 2351 (npSolver-pbo-I.) S 2349 2351 339 0 -1 4202496 359 0 0 0 0 0 0 0 20 0 1 0 273410471 9367552 275 33554432000 4194304 5064252 140733423641168 140733423640080 271787386446 0 65536 4100 65538 18446744071579302229 0 0 17 4 0 0 0 0 0
/proc/2351/statm: 2287 275 233 213 0 72 0
[startup+0.0487971 s]
/proc/loadavg: 4.18 3.48 2.71 3/179 2351
/proc/meminfo: memFree=28444744/32873648 swapFree=6844/6844
[pid=2351] ppid=2349 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/2351/stat : 2351 (npSolver-pbo-I.) S 2349 2351 339 0 -1 4202496 359 0 0 0 0 0 0 0 20 0 1 0 273410471 9367552 275 33554432000 4194304 5064252 140733423641168 140733423640080 271787386446 0 65536 4100 65538 18446744071579302229 0 0 17 4 0 0 0 0 0
/proc/2351/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.100273 s]
/proc/loadavg: 4.18 3.48 2.71 3/179 2351
/proc/meminfo: memFree=28444744/32873648 swapFree=6844/6844
[pid=2351] ppid=2349 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/2351/stat : 2351 (npSolver-pbo-I.) S 2349 2351 339 0 -1 4202496 359 0 0 0 0 0 0 0 20 0 1 0 273410471 9367552 275 33554432000 4194304 5064252 140733423641168 140733423640080 271787386446 0 65536 4100 65538 18446744071579302229 0 0 17 4 0 0 0 0 0
/proc/2351/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.300128 s]
/proc/loadavg: 4.18 3.48 2.71 3/179 2351
/proc/meminfo: memFree=28444744/32873648 swapFree=6844/6844
[pid=2351] ppid=2349 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/2351/stat : 2351 (npSolver-pbo-I.) S 2349 2351 339 0 -1 4202496 359 0 0 0 0 0 0 0 20 0 1 0 273410471 9367552 275 33554432000 4194304 5064252 140733423641168 140733423640080 271787386446 0 65536 4100 65538 18446744071579302229 0 0 17 4 0 0 0 0 0
/proc/2351/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.700235 s]
/proc/loadavg: 4.18 3.48 2.71 3/179 2351
/proc/meminfo: memFree=28444744/32873648 swapFree=6844/6844
[pid=2351] ppid=2349 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/2351/stat : 2351 (npSolver-pbo-I.) S 2349 2351 339 0 -1 4202496 359 0 0 0 0 0 0 0 20 0 1 0 273410471 9367552 275 33554432000 4194304 5064252 140733423641168 140733423640080 271787386446 0 65536 4100 65538 18446744071579302229 0 0 17 4 0 0 0 0 0
/proc/2351/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+1.50027 s]
/proc/loadavg: 4.18 3.48 2.71 3/181 2353
/proc/meminfo: memFree=28436664/32873648 swapFree=6844/6844
[pid=2351] ppid=2349 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/2351/stat : 2351 (npSolver-pbo-I.) S 2349 2351 339 0 -1 4202496 359 0 0 0 0 0 0 0 20 0 1 0 273410471 9367552 275 33554432000 4194304 5064252 140733423641168 140733423640080 271787386446 0 65536 4100 65538 18446744071579302229 0 0 17 4 0 0 0 0 0
/proc/2351/statm: 2287 275 233 213 0 72 0
[pid=2352] ppid=2351 vsize=10304 CPUtime=1.49 cores=0,2,4,6
/proc/2352/stat : 2352 (npSolver-pbo) R 2351 2351 339 0 -1 4202496 2239 0 0 0 149 0 0 0 20 0 1 0 273410472 10551296 2221 33554432000 4194304 5992684 140737241970432 140737241966552 5179600 0 0 4096 0 0 0 0 17 2 0 0 0 0 0
/proc/2352/statm: 2576 2221 145 440 0 2132 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 19452
[startup+3.10034 s]
/proc/loadavg: 4.00 3.45 2.70 3/183 2355
/proc/meminfo: memFree=28391080/32873648 swapFree=6844/6844
[pid=2351] ppid=2349 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/2351/stat : 2351 (npSolver-pbo-I.) S 2349 2351 339 0 -1 4202496 359 0 0 0 0 0 0 0 20 0 1 0 273410471 9367552 275 33554432000 4194304 5064252 140733423641168 140733423640080 271787386446 0 65536 4100 65538 18446744071579302229 0 0 17 4 0 0 0 0 0
/proc/2351/statm: 2287 275 233 213 0 72 0
[pid=2352] ppid=2351 vsize=11304 CPUtime=2.91 cores=0,2,4,6
/proc/2352/stat : 2352 (npSolver-pbo) S 2351 2351 339 0 -1 4204032 3066 9766 0 0 215 2 72 2 20 0 1 0 273410472 11575296 2503 33554432000 4194304 5992684 140737241970432 140737241964968 5240597 0 0 4096 0 18446744071580380219 0 0 17 0 0 0 0 0 0
/proc/2352/statm: 2826 2503 184 440 0 2382 0
Current children cumulated CPU time (s) 2.91
Current children cumulated vsize (KiB) 20452
Solver just ended. Dumping a history of the last processes samples
Child status: 0
Real time (s): 3.1854
CPU time (s): 2.93455
CPU user time (s): 2.87756
CPU system time (s): 0.056991
CPU usage (%): 92.1252
Max. virtual memory (cumulated for all children) (KiB): 66832
getrusage(RUSAGE_CHILDREN,...) data:
user time used= 2.87756
system time used= 0.056991
maximum resident set size= 35416
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 13208
page faults= 0
swaps= 0
block input operations= 0
block output operations= 17840
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2172
involuntary context switches= 14
runsolver used 0.006998 second user time and 0.020996 second system time
The end
Begin job on node115 at 2012-05-27 00:53:57
IDJOB=3699730
IDBENCH=2951
IDSOLVER=2276
FILE ID=node115/3699730-1338072837
RUNJOBID= node115-1338051787-355
PBS_JOBID= 14624382
Free space on /tmp= 71540 MiB
SOLVER NAME= npSolver inc
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.08.opb
COMMAND LINE= DIR/npSolver-pbo-I.sh BENCHNAME RANDOMSEED TMPDIR DIR
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-3699730-1338072837/watcher-3699730-1338072837 -o /tmp/evaluation-result-3699730-1338072837/solver-3699730-1338072837 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-I.sh HOME/instance-3699730-1338072837.opb 1340502706 HOME HOME
TIME LIMIT= 1800 seconds
MEMORY LIMIT= 15500 MiB
NBCORE= 4
MD5SUM BENCH= 7e2e59a69914c0aa8f6d18f073e252a7
RANDOM SEED=1340502706
node115.alineos.net Linux 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.462
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.92
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.462
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 0
cpu cores : 4
apicid : 16
initial apicid : 16
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.462
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.92
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.462
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 1
cpu cores : 4
apicid : 18
initial apicid : 18
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.462
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.92
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.462
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 2
cpu cores : 4
apicid : 20
initial apicid : 20
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.462
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.462
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 3
cpu cores : 4
apicid : 22
initial apicid : 22
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5331.91
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
/proc/meminfo:
MemTotal: 32873648 kB
MemFree: 28445536 kB
Buffers: 285324 kB
Cached: 3160856 kB
SwapCached: 0 kB
Active: 1239992 kB
Inactive: 2356920 kB
Active(anon): 153512 kB
Inactive(anon): 0 kB
Active(file): 1086480 kB
Inactive(file): 2356920 kB
Unevictable: 6844 kB
Mlocked: 6844 kB
SwapTotal: 67108856 kB
SwapFree: 67108856 kB
Dirty: 23692 kB
Writeback: 0 kB
AnonPages: 215108 kB
Mapped: 15636 kB
Shmem: 200 kB
Slab: 672616 kB
SReclaimable: 116136 kB
SUnreclaim: 556480 kB
KernelStack: 1464 kB
PageTables: 4456 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 83545680 kB
Committed_AS: 300700 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 346400 kB
VmallocChunk: 34341988052 kB
HardwareCorrupted: 0 kB
AnonHugePages: 165888 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 7680 kB
DirectMap2M: 33538048 kB
Free space on /tmp at the end= 71524 MiB
End job on node115 at 2012-05-27 00:54:00