runsolver Copyright (C) 2010-2011 Olivier ROUSSEL
This is runsolver version 3.3.1 (svn: 989)
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-3699729-1338072871/watcher-3699729-1338072871 -o /tmp/evaluation-result-3699729-1338072871/solver-3699729-1338072871 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-I.sh HOME/instance-3699729-1338072871.opb 998864826 HOME HOME
running on 4 cores: 1,3,5,7
Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 1900 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 15872000 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 15923200 KiB
Current StackSize limit: 10240 KiB
[startup+0 s]
/proc/loadavg: 2.12 2.08 2.01 3/181 13021
/proc/meminfo: memFree=31529640/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
[startup+0.0681719 s]
/proc/loadavg: 2.12 2.08 2.01 3/181 13021
/proc/meminfo: memFree=31529640/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.100245 s]
/proc/loadavg: 2.12 2.08 2.01 3/181 13021
/proc/meminfo: memFree=31529640/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.300215 s]
/proc/loadavg: 2.12 2.08 2.01 3/181 13021
/proc/meminfo: memFree=31529640/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.700213 s]
/proc/loadavg: 2.12 2.08 2.01 3/181 13021
/proc/meminfo: memFree=31529640/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+1.50033 s]
/proc/loadavg: 2.12 2.08 2.01 3/183 13023
/proc/meminfo: memFree=31522420/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
[pid=13022] ppid=13021 vsize=10840 CPUtime=1.34 cores=1,3,5,7
/proc/13022/stat : 13022 (npSolver-pbo) S 13021 13021 8474 0 -1 4202496 3098 0 0 0 133 1 0 0 20 0 1 0 273412462 11100160 2350 33554432000 4194304 5992684 140736665250960 140736665245408 5175646 0 65536 4102 0 18446744071579302229 0 0 17 3 0 0 0 0 0
/proc/13022/statm: 2710 2350 164 440 0 2266 0
Current children cumulated CPU time (s) 1.34
Current children cumulated vsize (KiB) 19988
Solver just ended. Dumping a history of the last processes samples
[startup+2.3003 s]
/proc/loadavg: 2.12 2.08 2.01 3/184 13027
/proc/meminfo: memFree=31513580/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
[pid=13022] ppid=13021 vsize=11188 CPUtime=2.26 cores=1,3,5,7
/proc/13022/stat : 13022 (npSolver-pbo) R 13021 13021 8474 0 -1 4202496 3226 9765 0 0 156 1 66 3 20 0 1 0 273412462 11456512 2444 33554432000 4194304 5992684 140736665250960 140736665245736 5179600 0 0 4096 0 0 0 0 17 3 0 0 0 0 0
/proc/13022/statm: 2797 2444 172 440 0 2353 0
[pid=13027] ppid=13022 vsize=10216 CPUtime=0.01 cores=1,3,5,7
/proc/13027/stat : 13027 (glucosInc) S 13022 13021 8474 0 -1 4202496 1060 0 0 0 1 0 0 0 20 0 1 0 273412667 10461184 1545 33554432000 4194304 5654031 140733531216032 140733531214344 4976656 0 0 4096 0 18446744071580380219 0 0 17 1 0 0 0 0 0
/proc/13027/statm: 2554 1545 147 357 0 2194 0
Current children cumulated CPU time (s) 2.27
Current children cumulated vsize (KiB) 30552
[startup+2.70039 s]
/proc/loadavg: 2.12 2.08 2.01 3/184 13027
/proc/meminfo: memFree=31513580/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
[pid=13022] ppid=13021 vsize=11192 CPUtime=2.54 cores=1,3,5,7
/proc/13022/stat : 13022 (npSolver-pbo) S 13021 13021 8474 0 -1 4204032 3241 9765 0 0 184 1 66 3 20 0 1 0 273412462 11460608 2457 33554432000 4194304 5992684 140736665250960 140736665245496 5240597 0 0 4096 0 18446744071580380219 0 0 17 3 0 0 0 0 0
/proc/13022/statm: 2798 2457 184 440 0 2354 0
[pid=13027] ppid=13022 vsize=10216 CPUtime=0.01 cores=1,3,5,7
/proc/13027/stat : 13027 (glucosInc) S 13022 13021 8474 0 -1 4202496 1060 0 0 0 1 0 0 0 20 0 1 0 273412667 10461184 1545 33554432000 4194304 5654031 140733531216032 140733531214344 4976656 0 0 4096 0 18446744071580380219 0 0 17 1 0 0 0 0 0
/proc/13027/statm: 2554 1545 147 357 0 2194 0
Current children cumulated CPU time (s) 2.55
Current children cumulated vsize (KiB) 30556
[startup+2.90028 s]
/proc/loadavg: 2.12 2.08 2.01 3/184 13027
/proc/meminfo: memFree=31513580/32873844 swapFree=7112/7112
[pid=13021] ppid=13019 vsize=9148 CPUtime=0 cores=1,3,5,7
/proc/13021/stat : 13021 (npSolver-pbo-I.) S 13019 13021 8474 0 -1 4202496 357 0 0 0 0 0 0 0 20 0 1 0 273412462 9367552 274 33554432000 4194304 5064252 140734062308240 140734062307152 273588840014 0 65536 4100 65538 18446744071579302229 0 0 17 5 0 0 0 0 0
/proc/13021/statm: 2287 274 233 213 0 72 0
[pid=13022] ppid=13021 vsize=11192 CPUtime=2.54 cores=1,3,5,7
/proc/13022/stat : 13022 (npSolver-pbo) S 13021 13021 8474 0 -1 4204032 3241 9765 0 0 184 1 66 3 20 0 1 0 273412462 11460608 2457 33554432000 4194304 5992684 140736665250960 140736665245496 5240597 0 0 4096 0 18446744071580380219 0 0 17 3 0 0 0 0 0
/proc/13022/statm: 2798 2457 184 440 0 2354 0
[pid=13027] ppid=13022 vsize=10216 CPUtime=0.01 cores=1,3,5,7
/proc/13027/stat : 13027 (glucosInc) S 13022 13021 8474 0 -1 4202496 1060 0 0 0 1 0 0 0 20 0 1 0 273412667 10461184 1545 33554432000 4194304 5654031 140733531216032 140733531214344 4976656 0 0 4096 0 18446744071580380219 0 0 17 1 0 0 0 0 0
/proc/13027/statm: 2554 1545 147 357 0 2194 0
Current children cumulated CPU time (s) 2.55
Current children cumulated vsize (KiB) 30556
Child status: 0
Real time (s): 2.90798
CPU time (s): 2.55661
CPU user time (s): 2.50662
CPU system time (s): 0.049992
CPU usage (%): 87.917
Max. virtual memory (cumulated for all children) (KiB): 30556
getrusage(RUSAGE_CHILDREN,...) data:
user time used= 2.50662
system time used= 0.049992
maximum resident set size= 33368
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 13380
page faults= 0
swaps= 0
block input operations= 0
block output operations= 15264
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2185
involuntary context switches= 10
runsolver used 0.004999 second user time and 0.015997 second system time
The end
Begin job on node132 at 2012-05-27 00:54:31
IDJOB=3699729
IDBENCH=2957
IDSOLVER=2276
FILE ID=node132/3699729-1338072871
RUNJOBID= node132-1338052924-8491
PBS_JOBID= 14624394
Free space on /tmp= 71512 MiB
SOLVER NAME= npSolver inc
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.00.opb
COMMAND LINE= DIR/npSolver-pbo-I.sh BENCHNAME RANDOMSEED TMPDIR DIR
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-3699729-1338072871/watcher-3699729-1338072871 -o /tmp/evaluation-result-3699729-1338072871/solver-3699729-1338072871 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-I.sh HOME/instance-3699729-1338072871.opb 998864826 HOME HOME
TIME LIMIT= 1800 seconds
MEMORY LIMIT= 15500 MiB
NBCORE= 4
MD5SUM BENCH= 9e8d546df5cfe52cfb5a29d8ae802e41
RANDOM SEED=998864826
node132.alineos.net Linux 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.832
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5333.66
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.832
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 0
cpu cores : 4
apicid : 16
initial apicid : 16
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.832
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.56
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.832
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 1
cpu cores : 4
apicid : 18
initial apicid : 18
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.56
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.832
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.832
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 2
cpu cores : 4
apicid : 20
initial apicid : 20
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.56
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.832
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2666.832
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 3
cpu cores : 4
apicid : 22
initial apicid : 22
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
/proc/meminfo:
MemTotal: 32873844 kB
MemFree: 31530020 kB
Buffers: 131520 kB
Cached: 216568 kB
SwapCached: 1564 kB
Active: 481128 kB
Inactive: 91940 kB
Active(anon): 217220 kB
Inactive(anon): 9988 kB
Active(file): 263908 kB
Inactive(file): 81952 kB
Unevictable: 7112 kB
Mlocked: 7112 kB
SwapTotal: 67108856 kB
SwapFree: 67105232 kB
Dirty: 21700 kB
Writeback: 88 kB
AnonPages: 260912 kB
Mapped: 12412 kB
Shmem: 8 kB
Slab: 629220 kB
SReclaimable: 70324 kB
SUnreclaim: 558896 kB
KernelStack: 1536 kB
PageTables: 4440 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 83545776 kB
Committed_AS: 374656 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 346376 kB
VmallocChunk: 34341987860 kB
HardwareCorrupted: 0 kB
AnonHugePages: 155648 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 7872 kB
DirectMap2M: 33538048 kB
Free space on /tmp at the end= 71496 MiB
End job on node132 at 2012-05-27 00:54:34