runsolver Copyright (C) 2010-2011 Olivier ROUSSEL
This is runsolver version 3.3.1 (svn: 989)
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-3698134-1338072580/watcher-3698134-1338072580 -o /tmp/evaluation-result-3698134-1338072580/solver-3698134-1338072580 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itd.sh HOME/instance-3698134-1338072580.opb 1723199351 HOME HOME
running on 4 cores: 0,2,4,6
Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 1900 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 15872000 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 15923200 KiB
Current StackSize limit: 10240 KiB
[startup+0 s]
/proc/loadavg: 2.06 2.26 2.17 3/181 6534
/proc/meminfo: memFree=27648056/32873844 swapFree=7124/7124
[pid=6534] ppid=6532 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6534/stat : 6534 (npSolver-pbo-It) S 6532 6534 4265 0 -1 4202496 360 0 0 0 0 0 0 0 20 0 1 0 273383455 9367552 275 33554432000 4194304 5064252 140734576432048 140734576430960 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6534/statm: 2287 275 233 213 0 72 0
[startup+0.0231721 s]
/proc/loadavg: 2.06 2.26 2.17 3/181 6534
/proc/meminfo: memFree=27648056/32873844 swapFree=7124/7124
[pid=6534] ppid=6532 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6534/stat : 6534 (npSolver-pbo-It) S 6532 6534 4265 0 -1 4202496 360 0 0 0 0 0 0 0 20 0 1 0 273383455 9367552 275 33554432000 4194304 5064252 140734576432048 140734576430960 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6534/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.100251 s]
/proc/loadavg: 2.06 2.26 2.17 3/181 6534
/proc/meminfo: memFree=27648056/32873844 swapFree=7124/7124
[pid=6534] ppid=6532 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6534/stat : 6534 (npSolver-pbo-It) S 6532 6534 4265 0 -1 4202496 360 0 0 0 0 0 0 0 20 0 1 0 273383455 9367552 275 33554432000 4194304 5064252 140734576432048 140734576430960 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6534/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.300219 s]
/proc/loadavg: 2.06 2.26 2.17 3/181 6534
/proc/meminfo: memFree=27648056/32873844 swapFree=7124/7124
[pid=6534] ppid=6532 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6534/stat : 6534 (npSolver-pbo-It) S 6532 6534 4265 0 -1 4202496 360 0 0 0 0 0 0 0 20 0 1 0 273383455 9367552 275 33554432000 4194304 5064252 140734576432048 140734576430960 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6534/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.700195 s]
/proc/loadavg: 2.06 2.26 2.17 3/181 6534
/proc/meminfo: memFree=27648056/32873844 swapFree=7124/7124
[pid=6534] ppid=6532 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6534/stat : 6534 (npSolver-pbo-It) S 6532 6534 4265 0 -1 4202496 360 0 0 0 0 0 0 0 20 0 1 0 273383455 9367552 275 33554432000 4194304 5064252 140734576432048 140734576430960 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6534/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+1.50026 s]
/proc/loadavg: 2.06 2.26 2.17 3/183 6536
/proc/meminfo: memFree=27640548/32873844 swapFree=7124/7124
[pid=6534] ppid=6532 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6534/stat : 6534 (npSolver-pbo-It) S 6532 6534 4265 0 -1 4202496 360 0 0 0 0 0 0 0 20 0 1 0 273383455 9367552 275 33554432000 4194304 5064252 140734576432048 140734576430960 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6534/statm: 2287 275 233 213 0 72 0
[pid=6535] ppid=6534 vsize=10304 CPUtime=1.49 cores=0,2,4,6
/proc/6535/stat : 6535 (npSolver-pbo) R 6534 6534 4265 0 -1 4202496 2127 0 0 0 149 0 0 0 20 0 1 0 273383456 10551296 2110 33554432000 4194304 5992684 140737264879776 140737264875896 5179600 0 0 4096 0 0 0 0 17 4 0 0 0 0 0
/proc/6535/statm: 2576 2110 145 440 0 2132 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 19452
[startup+3.10031 s]
/proc/loadavg: 2.06 2.26 2.17 3/185 6538
/proc/meminfo: memFree=27596836/32873844 swapFree=7124/7124
[pid=6534] ppid=6532 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6534/stat : 6534 (npSolver-pbo-It) S 6532 6534 4265 0 -1 4202496 360 0 0 0 0 0 0 0 20 0 1 0 273383455 9367552 275 33554432000 4194304 5064252 140734576432048 140734576430960 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6534/statm: 2287 275 233 213 0 72 0
[pid=6535] ppid=6534 vsize=11304 CPUtime=2.88 cores=0,2,4,6
/proc/6535/stat : 6535 (npSolver-pbo) S 6534 6534 4265 0 -1 4204032 3067 9767 0 0 211 2 72 3 20 0 1 0 273383456 11575296 2503 33554432000 4194304 5992684 140737264879776 140737264874312 5240597 0 0 4096 0 18446744071580380219 0 0 17 4 0 0 0 0 0
/proc/6535/statm: 2826 2503 184 440 0 2382 0
Current children cumulated CPU time (s) 2.88
Current children cumulated vsize (KiB) 20452
Solver just ended. Dumping a history of the last processes samples
[startup+3.20028 s]
/proc/loadavg: 2.05 2.25 2.17 2/185 6541
/proc/meminfo: memFree=27611976/32873844 swapFree=7124/7124
[pid=6534] ppid=6532 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6534/stat : 6534 (npSolver-pbo-It) S 6532 6534 4265 0 -1 4202496 360 0 0 0 0 0 0 0 20 0 1 0 273383455 9367552 275 33554432000 4194304 5064252 140734576432048 140734576430960 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6534/statm: 2287 275 233 213 0 72 0
[pid=6535] ppid=6534 vsize=11304 CPUtime=2.88 cores=0,2,4,6
/proc/6535/stat : 6535 (npSolver-pbo) S 6534 6534 4265 0 -1 4204032 3067 9767 0 0 211 2 72 3 20 0 1 0 273383456 11575296 2503 33554432000 4194304 5992684 140737264879776 140737264874312 5240597 0 0 4096 0 18446744071580380219 0 0 17 4 0 0 0 0 0
/proc/6535/statm: 2826 2503 184 440 0 2382 0
[pid=6540] ppid=6535 vsize=10484 CPUtime=0.01 cores=0,2,4,6
/proc/6540/stat : 6540 (glucosInc) S 6535 6534 4265 0 -1 4202496 1291 0 0 0 1 0 0 0 20 0 1 0 273383688 10735616 1751 33554432000 4194304 5654031 140737173399600 140737173397912 4976656 0 0 4096 0 18446744071580380219 0 0 17 0 0 0 0 0 0
/proc/6540/statm: 2621 1751 147 357 0 2261 0
Current children cumulated CPU time (s) 2.89
Current children cumulated vsize (KiB) 30936
Child status: 0
Real time (s): 3.29099
CPU time (s): 2.90656
CPU user time (s): 2.84457
CPU system time (s): 0.06199
CPU usage (%): 88.3187
Max. virtual memory (cumulated for all children) (KiB): 66832
getrusage(RUSAGE_CHILDREN,...) data:
user time used= 2.84457
system time used= 0.06199
maximum resident set size= 35420
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 13209
page faults= 0
swaps= 0
block input operations= 0
block output operations= 17840
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2283
involuntary context switches= 16
runsolver used 0.006998 second user time and 0.022996 second system time
The end
Begin job on node134 at 2012-05-27 00:49:41
IDJOB=3698134
IDBENCH=2951
IDSOLVER=2275
FILE ID=node134/3698134-1338072580
RUNJOBID= node134-1338052941-4281
PBS_JOBID= 14624402
Free space on /tmp= 70924 MiB
SOLVER NAME= npSolver inc-topDown
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.08.opb
COMMAND LINE= DIR/npSolver-pbo-Itd.sh BENCHNAME RANDOMSEED TMPDIR DIR
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-3698134-1338072580/watcher-3698134-1338072580 -o /tmp/evaluation-result-3698134-1338072580/solver-3698134-1338072580 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itd.sh HOME/instance-3698134-1338072580.opb 1723199351 HOME HOME
TIME LIMIT= 1800 seconds
MEMORY LIMIT= 15500 MiB
NBCORE= 4
MD5SUM BENCH= 7e2e59a69914c0aa8f6d18f073e252a7
RANDOM SEED=1723199351
node134.alineos.net Linux 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5334.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 0
cpu cores : 4
apicid : 16
initial apicid : 16
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.56
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 1
cpu cores : 4
apicid : 18
initial apicid : 18
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.59
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 2
cpu cores : 4
apicid : 20
initial apicid : 20
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.57
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 3
cpu cores : 4
apicid : 22
initial apicid : 22
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.56
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
/proc/meminfo:
MemTotal: 32873844 kB
MemFree: 27648856 kB
Buffers: 328004 kB
Cached: 3637376 kB
SwapCached: 0 kB
Active: 1938304 kB
Inactive: 2448924 kB
Active(anon): 417712 kB
Inactive(anon): 5996 kB
Active(file): 1520592 kB
Inactive(file): 2442928 kB
Unevictable: 7124 kB
Mlocked: 7124 kB
SwapTotal: 67108856 kB
SwapFree: 67108856 kB
Dirty: 23388 kB
Writeback: 0 kB
AnonPages: 476928 kB
Mapped: 15908 kB
Shmem: 212 kB
Slab: 687092 kB
SReclaimable: 128864 kB
SUnreclaim: 558228 kB
KernelStack: 1536 kB
PageTables: 5220 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 83545776 kB
Committed_AS: 594064 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 346376 kB
VmallocChunk: 34341987860 kB
HardwareCorrupted: 0 kB
AnonHugePages: 344064 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 7872 kB
DirectMap2M: 33538048 kB
Free space on /tmp at the end= 70908 MiB
End job on node134 at 2012-05-27 00:49:44