runsolver Copyright (C) 2010-2011 Olivier ROUSSEL
This is runsolver version 3.3.1 (svn: 989)
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-3698133-1338072618/watcher-3698133-1338072618 -o /tmp/evaluation-result-3698133-1338072618/solver-3698133-1338072618 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itd.sh HOME/instance-3698133-1338072618.opb 220974991 HOME HOME
running on 4 cores: 0,2,4,6
Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 1900 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 15872000 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 15923200 KiB
Current StackSize limit: 10240 KiB
[startup+0 s]
/proc/loadavg: 2.19 2.27 2.17 3/181 6712
/proc/meminfo: memFree=27634004/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
[startup+0.076982 s]
/proc/loadavg: 2.19 2.27 2.17 3/181 6712
/proc/meminfo: memFree=27634004/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.100233 s]
/proc/loadavg: 2.19 2.27 2.17 3/181 6712
/proc/meminfo: memFree=27634004/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.300195 s]
/proc/loadavg: 2.19 2.27 2.17 3/181 6712
/proc/meminfo: memFree=27634004/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+0.700216 s]
/proc/loadavg: 2.19 2.27 2.17 3/181 6712
/proc/meminfo: memFree=27634004/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
Current children cumulated CPU time (s) 0
Current children cumulated vsize (KiB) 9148
[startup+1.50019 s]
/proc/loadavg: 2.19 2.27 2.17 3/183 6714
/proc/meminfo: memFree=27627040/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
[pid=6713] ppid=6712 vsize=10840 CPUtime=1.34 cores=0,2,4,6
/proc/6713/stat : 6713 (npSolver-pbo) S 6712 6712 4265 0 -1 4202496 3084 0 0 0 133 1 0 0 20 0 1 0 273387221 11100160 2338 33554432000 4194304 5992684 140733798990576 140733798985024 5175646 0 65536 4102 0 18446744071579302229 0 0 17 4 0 0 0 0 0
/proc/6713/statm: 2710 2338 164 440 0 2266 0
Current children cumulated CPU time (s) 1.34
Current children cumulated vsize (KiB) 19988
Solver just ended. Dumping a history of the last processes samples
[startup+2.3003 s]
/proc/loadavg: 2.19 2.27 2.17 3/184 6718
/proc/meminfo: memFree=27618332/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
[pid=6713] ppid=6712 vsize=11188 CPUtime=2.26 cores=0,2,4,6
/proc/6713/stat : 6713 (npSolver-pbo) R 6712 6712 4265 0 -1 4202496 3212 9252 0 0 161 1 62 2 20 0 1 0 273387221 11456512 2432 33554432000 4194304 5992684 140733798990576 140733798976840 5179600 0 0 4096 0 0 0 0 17 4 0 0 0 0 0
/proc/6713/statm: 2797 2432 172 440 0 2353 0
[pid=6718] ppid=6713 vsize=10220 CPUtime=0.01 cores=0,2,4,6
/proc/6718/stat : 6718 (glucosInc) S 6713 6712 4265 0 -1 4202496 1097 0 0 0 1 0 0 0 20 0 1 0 273387421 10465280 1571 33554432000 4194304 5654031 140735536422576 140735536420888 4976656 0 0 4096 0 18446744071580380219 0 0 17 0 0 0 0 0 0
/proc/6718/statm: 2555 1571 147 357 0 2195 0
Current children cumulated CPU time (s) 2.27
Current children cumulated vsize (KiB) 30556
[startup+2.70034 s]
/proc/loadavg: 2.19 2.27 2.17 3/184 6718
/proc/meminfo: memFree=27618332/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
[pid=6713] ppid=6712 vsize=11192 CPUtime=2.49 cores=0,2,4,6
/proc/6713/stat : 6713 (npSolver-pbo) S 6712 6712 4265 0 -1 4204032 3227 9252 0 0 183 2 62 2 20 0 1 0 273387221 11460608 2445 33554432000 4194304 5992684 140733798990576 140733798985112 5240597 0 0 4096 0 18446744071580380219 0 0 17 4 0 0 0 0 0
/proc/6713/statm: 2798 2445 184 440 0 2354 0
[pid=6718] ppid=6713 vsize=10220 CPUtime=0.01 cores=0,2,4,6
/proc/6718/stat : 6718 (glucosInc) S 6713 6712 4265 0 -1 4202496 1097 0 0 0 1 0 0 0 20 0 1 0 273387421 10465280 1571 33554432000 4194304 5654031 140735536422576 140735536420888 4976656 0 0 4096 0 18446744071580380219 0 0 17 0 0 0 0 0 0
/proc/6718/statm: 2555 1571 147 357 0 2195 0
Current children cumulated CPU time (s) 2.5
Current children cumulated vsize (KiB) 30560
[startup+2.80032 s]
/proc/loadavg: 2.19 2.27 2.17 3/184 6718
/proc/meminfo: memFree=27618332/32873844 swapFree=7124/7124
[pid=6712] ppid=6710 vsize=9148 CPUtime=0 cores=0,2,4,6
/proc/6712/stat : 6712 (npSolver-pbo-It) S 6710 6712 4265 0 -1 4202496 358 0 0 0 0 0 0 0 20 0 1 0 273387221 9367552 275 33554432000 4194304 5064252 140734383933296 140734383932208 273905509966 0 65536 4100 65538 18446744071579302229 0 0 17 0 0 0 0 0 0
/proc/6712/statm: 2287 275 233 213 0 72 0
[pid=6713] ppid=6712 vsize=11192 CPUtime=2.49 cores=0,2,4,6
/proc/6713/stat : 6713 (npSolver-pbo) S 6712 6712 4265 0 -1 4204032 3227 9252 0 0 183 2 62 2 20 0 1 0 273387221 11460608 2445 33554432000 4194304 5992684 140733798990576 140733798985112 5240597 0 0 4096 0 18446744071580380219 0 0 17 4 0 0 0 0 0
/proc/6713/statm: 2798 2445 184 440 0 2354 0
[pid=6718] ppid=6713 vsize=10220 CPUtime=0.01 cores=0,2,4,6
/proc/6718/stat : 6718 (glucosInc) S 6713 6712 4265 0 -1 4202496 1097 0 0 0 1 0 0 0 20 0 1 0 273387421 10465280 1571 33554432000 4194304 5654031 140735536422576 140735536420888 4976656 0 0 4096 0 18446744071580380219 0 0 17 0 0 0 0 0 0
/proc/6718/statm: 2555 1571 147 357 0 2195 0
Current children cumulated CPU time (s) 2.5
Current children cumulated vsize (KiB) 30560
Child status: 0
Real time (s): 2.87365
CPU time (s): 2.50962
CPU user time (s): 2.45963
CPU system time (s): 0.049992
CPU usage (%): 87.3321
Max. virtual memory (cumulated for all children) (KiB): 30560
getrusage(RUSAGE_CHILDREN,...) data:
user time used= 2.45963
system time used= 0.049992
maximum resident set size= 33364
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 12853
page faults= 0
swaps= 0
block input operations= 0
block output operations= 15264
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2302
involuntary context switches= 15
runsolver used 0.003999 second user time and 0.015997 second system time
The end
Begin job on node134 at 2012-05-27 00:50:18
IDJOB=3698133
IDBENCH=2957
IDSOLVER=2275
FILE ID=node134/3698133-1338072618
RUNJOBID= node134-1338052941-4281
PBS_JOBID= 14624402
Free space on /tmp= 70928 MiB
SOLVER NAME= npSolver inc-topDown
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.00.opb
COMMAND LINE= DIR/npSolver-pbo-Itd.sh BENCHNAME RANDOMSEED TMPDIR DIR
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-3698133-1338072618/watcher-3698133-1338072618 -o /tmp/evaluation-result-3698133-1338072618/solver-3698133-1338072618 -C 1800 -W 1900 -M 15500 HOME/npSolver-pbo-Itd.sh HOME/instance-3698133-1338072618.opb 220974991 HOME HOME
TIME LIMIT= 1800 seconds
MEMORY LIMIT= 15500 MiB
NBCORE= 4
MD5SUM BENCH= 9e8d546df5cfe52cfb5a29d8ae802e41
RANDOM SEED=220974991
node134.alineos.net Linux 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5334.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 0
cpu cores : 4
apicid : 16
initial apicid : 16
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.56
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 1
cpu cores : 4
apicid : 18
initial apicid : 18
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.59
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 2
cpu cores : 4
apicid : 20
initial apicid : 20
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.55
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 0
siblings : 4
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.57
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 26
model name : Intel(R) Xeon(R) CPU X5550 @ 2.67GHz
stepping : 5
cpu MHz : 2667.278
cache size : 8192 KB
physical id : 1
siblings : 4
core id : 3
cpu cores : 4
apicid : 22
initial apicid : 22
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips : 5332.56
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
/proc/meminfo:
MemTotal: 32873844 kB
MemFree: 27634384 kB
Buffers: 328760 kB
Cached: 3648932 kB
SwapCached: 0 kB
Active: 1936672 kB
Inactive: 2462152 kB
Active(anon): 417704 kB
Inactive(anon): 5996 kB
Active(file): 1518968 kB
Inactive(file): 2456156 kB
Unevictable: 7124 kB
Mlocked: 7124 kB
SwapTotal: 67108856 kB
SwapFree: 67108856 kB
Dirty: 21512 kB
Writeback: 0 kB
AnonPages: 438044 kB
Mapped: 15712 kB
Shmem: 212 kB
Slab: 687804 kB
SReclaimable: 128908 kB
SUnreclaim: 558896 kB
KernelStack: 1504 kB
PageTables: 4708 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 83545776 kB
Committed_AS: 593944 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 346376 kB
VmallocChunk: 34341987860 kB
HardwareCorrupted: 0 kB
AnonHugePages: 305152 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 7872 kB
DirectMap2M: 33538048 kB
Free space on /tmp at the end= 70908 MiB
End job on node134 at 2012-05-27 00:50:21